- ENCODE Project — International project (headed by Ewan Birney of BioPerl fame) doxes the human genome, bigtime. See the Nature piece, and Ed Yong’s explanation of the awesome for more. Not only did they release the data, but also the software, including a custom VM.
- 5 Ways You Don’t Realize Movies Are Controlling Your Brain — this! is! awesome!
- RC Grasshoppers — not a band name, an Israeli research project funded by the US Army, to remotely-control insects in flight. Instead of building a tiny plane whose dimensions would be measured in centimeters, the researchers are taking advantage of 300 million years of evolution.
ENTRIES TAGGED "genomics"
Design's role in genomics and synthetic biology, robots taking our jobs, and scientists growing burgers in labs.
"Like a spaceship that was parked in our back yard"
Human Genome Doxed, Programmed by Movies, CritterDrones, and Responsive Websites
DNA storage could change the way we store and archive information.
Drone Show, Ads, GitHub's Importance, and Crowdfunding Science
- Unmanned Systems North America 2012 — huge tradeshow for drones. (via Directions Magazine)
- On Thneeds and the Death of Display Ads (John Battelle) — the video interstitial. Once anathema to nearly every publisher on the planet, this full page unit is now standard on the New York Times, Wired, Forbes, and countless other publishing sites. And while audiences may balk at seeing a full-page video ad after clicking from a search engine or other referring agent, the fact is, skipping the ad is about as hard as turning the page in a magazine. And in magazines, full page ads work for marketers. If you’d raised a kid on AdBlocker, and then at age 15 she saw the ad-filled Internet for the first time, she’d think her browser had been taken over by malware. (via Tim Bray)
- The Most Important Social Network: GitHub — I suspect that GitHub’s servers now contain the world’s largest corpus of commentary around intellectual production.
- Crowdfunded Genomics — a girl with a never-before-seen developmental disorder had her exome (the useful bits of DNA) sequenced, and a never-before-seen DNA mutation found. The money for it was raised by crowdfunding. (via Ed Yong)
Ubicomp Middleware, Big Dairy Data, Privacy, and Timelines
- Electric Imp — yet another group working on the necessary middleware for ubiquitous networked devices.
- How Big Data Transformed the Dairy Industry (The Atlantic) — cutting-edge genomics company Illumina has precisely one applied market: animal science. They make a chip that measures 50,000 markers on the cow genome for attributes that control the economically important functions of those animals.
- The Curious Case of Internet Privacy (Cory Doctorow) — I’m with Cory on the perniciousness of privacy-digesting deals between free sites and users, but I’m increasingly becoming convinced that privacy is built into business models and not technology.
Personal Genomics, NodeJS FTP, Bad Workshops, and Piggy Eclipse
- 23andMe Disproves Its Own Business Model — a hostile article talking about how there’s little predictive power in genetics for diabetes and Parkinson’s so what’s the point of buying a 23andMe subscription? The wider issue is that, as we’ve known for a while, mapping out your genome only helps with a few clearcut conditions. For most medical things that we care about, environment is critical too–but that doesn’t mean that personalized genomics won’t help us better target therapies.
- jsftp — lightweight implementation of FTP client protocol for NodeJS. (via Sergi Mansilla)
- Really Bad Workshops — PDF eBook with rock-solid advice for everyone who runs a workshop.
- PigEditor (GitHub) — Eclipse plugin for those working with Pig and Hadoop. (via Josh Patterson)
Reflective Spaces, Slow Media, Chinese Genomics, and a Code Blog
- They Don’t Complain and They Die Quietly (Derek Powazek) — In this hyper-modern age of real-time always-on location-based info-overload, perhaps a moment of true peace and quiet is the greatest gift one can receive.
- The Slow Media Manifesto — Slow Media inspire, continuously affect the users’ thoughts and actions and are still perceptible years later. Steven Levy ran a Slow Media session at Foo. (via Bruce Sterling)
- The Dragon’s DNA (The Economist) — Beijing Genomics Institute putting more DNA-sequencing capacity into the top floor of a refurbished printing works than is available in the whole USA.
- Scribd Coding Blog — very interesting blog about the technology behind and inside Scribd. They process over 150M polygons a day, building web fonts from the fonts in PDF files, and tell you why it’s not straightforward. I wish there were more of these genuinely interesting technology blogs from companies that do interesting things.
More NoSQL, Data Medicine, Startups to Government, and Cake-and-eat-it Open Source
- Membase — an open-source (Apache 2.0 license) distributed, key-value database management system optimized for storing data behind interactive web applications. These applications must service many concurrent users; creating, storing, retrieving, aggregating, manipulating and presenting data in real-time. Supporting these requirements, membase processes data operations with quasi-deterministic low latency and high sustained throughput. (via Hacker News)
- Sergey’s Search (Wired) — Sergey Brin, one of the Google founders, learned he had a gene allele that gave him much higher odds of getting Parkinson’s. His response has been to help medical research, both with money and through 23andme. Langston decided to see whether the 23andMe Research Initiative might be able to shed some insight on the correlation, so he rang up 23andMe’s Eriksson, and asked him to run a search. In a few minutes, Eriksson was able to identify 350 people who had the mutation responsible for Gaucher’s. A few clicks more and he was able to calculate that they were five times more likely to have Parkinson’s disease, a result practically identical to the NEJM study. All told, it took about 20 minutes. “It would’ve taken years to learn that in traditional epidemiology,” Langston says. “Even though we’re in the Wright brothers early days with this stuff, to get a result so strongly and so quickly is remarkable.”
- Startup.gov (YouTube) — Anil Dash talk at Personal Democracy Forum on applying insights from startups to government. I hope the more people say this, the greater the odds it’ll be acted on.
- Open Core Software — Marten Mickos (ex-MySQL) talks up “open core” (open source base, proprietary extensions) as a way to resolve the conflict of “change the world with open source” and “make money”. Brian Aker disagrees: There has been no successful launch of an open core company that has reached any significant size, especially of the size that Marten hints at in the article. My take: there are three reasons for open source (freedoms, price, and development scale) and if you close the source to part of your product then the whole product loses those benefits. If you open source enough that the open source bit has massive momentum, then you probably don’t have enough left proprietary to gain huge financial benefit.